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Abstract The current study was conducted on 748 camel samples (420 faecal samples, 228 muscle samples and 100 blood samples) at Zagazig and Belbais markets and abattoirs, Sharkia Province, Egypt from the period extended from January 2010 till December 2011 for investigating coccidial parasites infecting camels by studying the prevalence rate, morphology of the detected parasites through light and electron microscope as well as studying its molecular structures by polymerase chain reaction test for thin walled sarcocysts of Sarcocystis cameli. This result showed that 254 out of 748 examined camels harboured coccidial parasites (33.96%). Sarcocystis species (48.68%), Eimeria species (24.29%), Cryptosporidium species (9.05%) and Toxoplasma gondii (3%). Out of 228 examined camel muscle samples, 111 were positive for microscopic sarcocysts (48.68%). Thin walled sarcocysts of Sarcocystis cameli were detected in 19 camel muscle samples (17.l2%) while thick walled sarcocysts of Sarcocystis cameli-canis were detected in 27 camel muscle samples (24.32%) and both types present in mixed infection in 65 camel muscle samples (58.56). Macroscopic cysts were not observed in examined camels. Sarcocysits were detected in oesophageal muscles (48.68%), tongue muscles (43.42%) followed by diaphragmatic muscles (39.91 %) and skeletal muscles (18.42%). Out of the 420 examined fecal samples, 102 were positive for Eimeria species (24.29%). Five Eimeria species were identified, |